Initialize the alignement before using it, with some ontology caching trick
//@deprecated The OntologyCache is now internal, use init( onto1, onto2 ) instead
InstanceBasedMatrixMeasure
This is a generic distance store in which
- a distance between instances is computed and stored in the table
- the classical distance between classes is computed from the distance between
instances through classical measure (linkage, etc.).
A new alignment is created such that for
any pair (o, o', n, r) in O the resulting alignment will contain:
( o', o, n, inverse(r)) iff compose(r) exists.
filter ontology entities which have no URI or external URI
ontoURI.equals(entURI.toString()) is for OWL API 1 : it seems that anonymous entities have their URI = ontology URI
Iterate on each subdirectory
Returns a vector[ each algo ] of vector [ each point ]
The points are computed by aggregating the values
(and in the end computing the average)