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Alignment API and Server 4.10 (2228M)
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R

raiseError(URI, TypeCheckingVisitor.TYPE, TypeCheckingVisitor.TYPE) - Method in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
 
rand - Variable in class fr.inrialpes.exmo.align.impl.renderer.SILKRendererVisitor
 
rand - Static variable in class fr.inrialpes.exmo.align.service.VolatilCache
 
randNumbers(int, int) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
randomNum() - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
rawmap - Variable in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
 
RDFGraph - Interface in fr.inrialpes.exmo.queryprocessor
 
rDFModel - Static variable in class fr.inrialpes.exmo.align.parser.RDFParser
 
RDFParser - Class in fr.inrialpes.exmo.align.parser
Parser for the EDOAL syntax.
RDFParser() - Constructor for class fr.inrialpes.exmo.align.parser.RDFParser
Creates an RDF Parser.
RDFParser(int) - Constructor for class fr.inrialpes.exmo.align.parser.RDFParser
Creates an RDF Parser.
RDFRendererVisitor - Class in fr.inrialpes.exmo.align.impl.renderer
Renders an alignment in its RDF format
RDFRendererVisitor(PrintWriter) - Constructor for class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
 
reachable(URI) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
Load an ontology
read(String) - Static method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
Parsing here we use Jena
read(InputStream) - Static method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
 
read(String) - Static method in class fr.inrialpes.exmo.align.impl.BasicParameters
Deprecated.
 
read(BasicParameters, String) - Static method in class fr.inrialpes.exmo.align.impl.BasicParameters
Deprecated.
 
read(String) - Method in class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation
 
readLOV(String) - Static method in class fr.inrialpes.exmo.align.service.LOVAlignmentService
 
readParameters(String[]) - Method in class fr.inrialpes.exmo.align.service.AlignmentService
 
reasoner - Variable in class fr.inrialpes.exmo.align.impl.eval.SemPRecEvaluator
 
reasoner - Variable in class fr.inrialpes.exmo.align.impl.IDDLOntologyNetwork
 
recall - Variable in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
 
recall - Variable in class fr.inrialpes.exmo.align.impl.eval.WeightedPREvaluator
 
receiver - Variable in class fr.inrialpes.exmo.align.service.msg.Message
 
reconnect() - Method in interface fr.inrialpes.exmo.align.service.DBService
 
reconnect() - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
recordAlignment(String, Alignment, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
records alignment identified by id force will register the new alignment even if it is already registered
recordElement(String, SyntaxElement) - Static method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
 
recordNetwork(String, OntologyNetwork, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
records a network identified by id
recordNewAlignment(Alignment, boolean) - Method in interface fr.inrialpes.exmo.align.service.Cache
records newly created alignment and returns its idenfifier
recordNewAlignment(String, Alignment, boolean) - Method in interface fr.inrialpes.exmo.align.service.Cache
records alignment identified by id and returns its idenfifier
recordNewAlignment(Alignment, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
records newly created alignment
recordNewAlignment(String, Alignment, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
records alignment identified by id
recordNewNetwork(OntologyNetwork, boolean) - Method in interface fr.inrialpes.exmo.align.service.Cache
records newly created network and returns its idenfifier
recordNewNetwork(String, OntologyNetwork, boolean) - Method in interface fr.inrialpes.exmo.align.service.Cache
records network identified by id and returns its idenfifier
recordNewNetwork(OntologyNetwork, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
records a newly created network
recordNewNetwork(String, OntologyNetwork, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
records alignment identified by id
recordOntology(Statement, URI, URI, Ontology<Object>) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
recordOntology(URI, O) - Method in class fr.inrialpes.exmo.ontowrap.OntologyCache
 
recordVariable(String, Expression) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
recorientprec - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
recorientrec - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
recoverAlignmentUri(String) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
recoverNetworkUri(String) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
reference - Variable in class fr.inrialpes.exmo.align.cli.ExtGroupEval
 
reference - Variable in class fr.inrialpes.exmo.align.cli.GroupEval
 
reference - Variable in class fr.inrialpes.exmo.align.cli.WGroupEval
 
REFL - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
register - Static variable in enum fr.inrialpes.exmo.align.impl.Namespace
 
register - Static variable in enum fr.inrialpes.exmo.align.parser.SyntaxElement
 
register(Alignment) - Method in interface fr.inrialpes.exmo.align.service.Directory
Register an alignment to the directory (if necessary)
register(Alignment) - Method in class fr.inrialpes.exmo.align.service.OysterDirectory
Register an alignment to the directory (if necessary)
registerClassExpression(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerClassId(Id) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerClassRestriction(int, long, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerEDOALExpression(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerInstanceId(Id) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerNetwork(BasicOntologyNetwork, String) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
registerPathExpression(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerPrefix(URI) - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
registerPropertyExpression(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerPropertyId(Id) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerRelationExpression(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerRelationId(Id) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerServer - Variable in class fr.inrialpes.exmo.align.service.SQLCache
 
registerServer(String, String, Boolean, String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
registerValueExpression(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
registerWithDF() - Method in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
 
rel - Variable in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
REL - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
relation - Variable in class fr.inrialpes.exmo.align.impl.BasicCell
 
relation - Variable in class fr.inrialpes.exmo.align.impl.BasicRelation
The initial relation given by the user (through parser for instance) This is never used in subclass relations (because they share one relation)
relation - Variable in enum fr.inrialpes.exmo.align.impl.rel.A16BaseRelation
NO CHANGE IS NECESSARY BEYOND THIS POINT (only change the class name) Unfortunately, this MUST be copied in all class.
relation - Variable in enum fr.inrialpes.exmo.align.impl.rel.A2BaseRelation
NO CHANGE IS NECESSARY BEYOND THIS POINT (only change the class name) Unfortunately, this MUST be copied in all class.
relation - Variable in enum fr.inrialpes.exmo.align.impl.rel.A5BaseRelation
NO CHANGE IS NECESSARY BEYOND THIS POINT (only change the class name) Unfortunately, this MUST be copied in all class.
relation - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the relation content as text...
RELATION - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
Relation - Interface in org.semanticweb.owl.align
 
RelationCoDomainRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a coDomainRestriction tag for RelationExpressions.
RelationCoDomainRestriction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationCoDomainRestriction
Constructs a simple RelationCoDomainRestriction
RelationCoDomainRestriction(ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationCoDomainRestriction
Constructs a RelationCoDomainRestriction with the given restriction.
RelationConstruction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a RelationExpression.
RelationConstruction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
 
RelationConstruction(SyntaxElement.Constructor, List<RelationExpression>) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
 
relationCreationMethod - Variable in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
RelationDomainRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a domainRestriction tag for RelationExpressions.
RelationDomainRestriction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationDomainRestriction
Constructs a simple RelationDomainRestiction
RelationDomainRestriction(ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationDomainRestriction
Constructs a RelationDomainRestiction with the given restriction.
RelationExpression - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a RelationExpression.
RelationExpression() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationExpression
 
RelationId - Class in fr.inrialpes.exmo.align.impl.edoal
A simple Id to represent a Relation.
RelationId() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationId
Creates an anonymous relation pattern
RelationId(String) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationId
 
RelationId(URI) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationId
 
RelationIterator() - Constructor for class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation.RelationIterator
 
RelationRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Superclass for all RelationConditions.
RelationRestriction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.RelationRestriction
 
relations - Static variable in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
relations - Static variable in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
relations - Static variable in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
RelationTransformer - Class in fr.inrialpes.exmo.align.impl.renderer
This class categorises relations of the API implementation with respect to the category of their use by renderers.
RelationTransformer() - Constructor for class fr.inrialpes.exmo.align.impl.renderer.RelationTransformer
 
relationType - Variable in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
relativePosition(Object, Object, HeavyLoadedOntology<Object>) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Returns the relative position of two entities in an ontology
relocateSource - Variable in class fr.inrialpes.exmo.align.gen.alt.EmptyModification
 
relocateTest(String) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
Generates an Alignment from the property list hosting the alignment.
relocateTest(String, String) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
relocateTest(String, String) - Method in class fr.inrialpes.exmo.align.gen.alt.EmptyModification
 
relocateTest(String, String) - Method in interface fr.inrialpes.exmo.align.gen.Alterator
Modifies the namespaces of source and target ontologies (for the main purpose of outputing them)
relocateTest(String) - Method in interface fr.inrialpes.exmo.align.gen.Alterator
 
relsensitive - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
relsensitive - Variable in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
 
relsensitive - Variable in class fr.inrialpes.exmo.align.impl.eval.WeightedPREvaluator
 
relset - Variable in class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation
 
remAlignment(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
 
remAlignment(Alignment) - Method in interface org.semanticweb.owl.align.OntologyNetwork
 
remBinding(LinkkeyBinding) - Method in class fr.inrialpes.exmo.align.impl.edoal.Linkkey
 
remCell(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
remCell(Cell) - Method in interface org.semanticweb.owl.align.Alignment
 
remOntology(URI) - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
 
remOntology(URI) - Method in interface org.semanticweb.owl.align.OntologyNetwork
 
remove() - Method in class fr.inrialpes.exmo.align.impl.ConcatenatedIterator
 
remove() - Method in class fr.inrialpes.exmo.align.impl.MIterator
 
remove() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIAnnotIt
 
REMOVE_CLASSES - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
REMOVE_CLASSESLEVEL - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
REMOVE_COMMENTS - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
REMOVE_INDIVIDUALS - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
REMOVE_PROPERTIES - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
REMOVE_RESTRICTIONS - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
removeAlignCell(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
removeClass(OntClass) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
removeClass(OntModel, OntClass) - Method in class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
RemoveClasses - Class in fr.inrialpes.exmo.align.gen.alt
 
RemoveClasses(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RemoveClasses
 
removeClassesComments(float) - Method in class fr.inrialpes.exmo.align.gen.alt.RemoveComments
 
RemoveClassLevel - Class in fr.inrialpes.exmo.align.gen.alt
 
RemoveClassLevel(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RemoveClassLevel
 
RemoveComments - Class in fr.inrialpes.exmo.align.gen.alt
 
RemoveComments(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RemoveComments
 
removeHasParameter(Parameter) - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
 
RemoveIndividuals - Class in fr.inrialpes.exmo.align.gen.alt
 
RemoveIndividuals(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RemoveIndividuals
 
removeIndividualsComments(float) - Method in class fr.inrialpes.exmo.align.gen.alt.RemoveComments
 
removeOntologiesComments(float) - Method in class fr.inrialpes.exmo.align.gen.alt.RemoveComments
 
RemoveProperties - Class in fr.inrialpes.exmo.align.gen.alt
 
RemoveProperties(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RemoveProperties
 
removePropertiesComments(float) - Method in class fr.inrialpes.exmo.align.gen.alt.RemoveComments
 
RemoveRestrictions - Class in fr.inrialpes.exmo.align.gen.alt
 
RemoveRestrictions(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RemoveRestrictions
 
removeSpaces(String) - Method in class fr.inrialpes.exmo.align.gen.alt.RenameThings
 
rename(Properties, String) - Method in class fr.inrialpes.exmo.align.gen.URITree
 
RENAME_CLASSES - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RENAME_METHOD - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RENAME_PROPERTIES - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RENAME_RANDOM - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RENAME_RESOURCES - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RENAME_SYNONYM - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RENAME_TRANSLATE - Static variable in class fr.inrialpes.exmo.align.gen.ParametersIds
 
RenameClasses - Class in fr.inrialpes.exmo.align.gen.alt
 
RenameClasses(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RenameClasses
 
renameColumn(Statement, String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
renameOntology(OntModel, String, String) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
Rename the ontology, just in case it does not have the same URI as its content...
RenameProperties - Class in fr.inrialpes.exmo.align.gen.alt
 
RenameProperties(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RenameProperties
 
renameResource(boolean, boolean, float, boolean, boolean, boolean, int) - Method in class fr.inrialpes.exmo.align.gen.alt.RenameThings
 
RenameThings - Class in fr.inrialpes.exmo.align.gen.alt
This is only an abstract class gathering the renaming routines
RenameThings(Alterator) - Constructor for class fr.inrialpes.exmo.align.gen.alt.RenameThings
 
renameTree(Properties) - Method in class fr.inrialpes.exmo.align.gen.URITree
 
render(AlignmentVisitor) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
This should be rewritten in order to generate the axiom ontology instead of printing it! And then use ontology serialization for getting it printed.
render(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
render(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
render(String, Message, String, Properties) - Method in class fr.inrialpes.exmo.align.service.WSAServProfile
 
render(AlignmentVisitor) - Method in interface org.semanticweb.owl.align.Alignment
Exporting The alignments are exported for other purposes.
renderAnonymous(Resource, String) - Method in class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
renderClassDescription(OntClass, int) - Method in class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
RenderedAlignment - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
RenderedAlignment(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.RenderedAlignment
 
RenderedAlignment(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.RenderedAlignment
 
RenderedNetwork - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
RenderedNetwork(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.RenderedNetwork
 
RenderedNetwork(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.RenderedNetwork
 
rendererClass - Variable in class fr.inrialpes.exmo.align.cli.GroupAlign
 
renderers - Variable in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
renderHTMLNetwork(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
renderHTMLNetwork(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
renderObject(URI, Object) - Method in class fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor
 
renderOntologyNetwork(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
renderOntologyNetwork(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
renderRestriction(Restriction) - Method in class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
renderURI(PrefixMapping, String) - Method in class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
renderVariables(Expression) - Method in class fr.inrialpes.exmo.align.impl.renderer.JSONRendererVisitor
 
renderVariables(Expression) - Method in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
 
renderVariables(Expression) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
repair(OntologyNetwork, Properties) - Method in class fr.inrialpes.exmo.align.impl.AbstractRepairer
Performs a local repair of a network of ontology by repairing all its alignments.
repair(Alignment, Properties) - Method in interface org.semanticweb.owl.align.AlignmentRepairer
Perform repair on the alignment.
repair(OntologyNetwork, Properties) - Method in interface org.semanticweb.owl.align.AlignmentRepairer
Perform repair on a whole network of ontologies.
replaceClassLabel(String, String, boolean, boolean, boolean, int) - Method in class fr.inrialpes.exmo.align.gen.alt.RenameThings
 
replacePropertyLabel(String, String, boolean, boolean, boolean, int) - Method in class fr.inrialpes.exmo.align.gen.alt.RenameThings
 
replyto(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
replywith(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
requestedblanks - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
requestedblanks - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
res - Variable in class fr.inrialpes.exmo.align.impl.edoal.TransfService
resource (uri) to the service
reset() - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
reset() - Method in interface fr.inrialpes.exmo.align.service.Cache
 
reset() - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
reset() - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
resetCacheStamp(Alignment) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
resetCacheStamp(OntologyNetwork) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
resetDatabase(boolean) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
resetTables() - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
resetVariables(Expression, String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
resetVariables(String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
resource - Variable in enum fr.inrialpes.exmo.align.parser.SyntaxElement
Holds the RDF Resource or property for the entity This is to be used by the RDF parser.
REST - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
restful - Variable in class fr.inrialpes.exmo.align.service.WSAServProfile
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.AlignmentId
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.AlignmentIds
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.AlignmentMetadata
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.CannotRenderAlignment
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.CannotStoreAlignment
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.EntityList
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.ErrorMsg
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.EvalResult
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.EvaluationId
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.Message
This must return an XML object, typically an attribute.
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.NonConformParameters
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.OntologyNetworkId
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.OntologyURI
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.RenderedAlignment
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.RenderedNetwork
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.RunTimeError
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.Success
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.TranslatedMessage
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.UnknownAlignment
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.UnknownMethod
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.UnknownOntologyNetwork
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.UnreachableAlignment
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.UnreachableOntology
 
RESTString() - Method in class fr.inrialpes.exmo.align.service.msg.UnreachableOntologyNetwork
 
result - Variable in class fr.inrialpes.exmo.align.impl.BasicEvaluator
 
result - Variable in class fr.inrialpes.exmo.align.service.AServProtocolManager.Aligner
 
result - Variable in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
Protege name: Result
Result - Interface in fr.inrialpes.exmo.queryprocessor
 
resultAlignment - Variable in class fr.inrialpes.exmo.align.gen.TestGenerator
 
RETRIEVE - Static variable in class fr.inrialpes.exmo.align.service.jade.messageontology.JADEFIPAAlignmentServerOntology
 
RETRIEVE - Class in fr.inrialpes.exmo.align.service.jade.messageontology
Protege name: RETRIEVE
RETRIEVE() - Constructor for class fr.inrialpes.exmo.align.service.jade.messageontology.RETRIEVE
 
retrieveAlignment(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
returns null if alignment not retrieved Otherwise returns AlignmentId or an ErrorMsg
retrieveAlignment(String, Alignment) - Method in class fr.inrialpes.exmo.align.service.SQLCache
loads the full alignment from the database and put it in the alignmentTable hastable should be invoked when: ( result.getExtension(CACHED) == "" AND result.getExtension(STORED) != "") {
retrieveDescription(String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
loads the description of alignments from the database and set them in an alignment object
retrieveOntology(String, Ontology<?>) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
retrieveOntologyNetwork(String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
returnAlignment(String, String) - Method in class fr.inrialpes.exmo.align.service.HTTPTransport
Returns the alignment in negociated format
returnNetwork(String, String) - Method in class fr.inrialpes.exmo.align.service.HTTPTransport
Returns the network in HTML or RDF
returnType - Variable in class fr.inrialpes.exmo.align.service.HTTPTransport
 
rewriteQuery(String) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
- replaces all entity IRI by their counterpart in the ontology Caveats: - This does only work for alignments with = - This does not care for the *:x status of alignments - This does work from ontology1 to ontology2, not the other way around (use invert() in this case).
rewriteQuery(String, Properties) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
rewriteSPARQLQuery(String) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
rewriteSPARQLQuery(String, Properties) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
rights - Variable in class fr.inrialpes.exmo.align.service.SQLCache
 
ROCCurveEvaluator - Class in fr.inrialpes.exmo.align.impl.eval
Compute ROCCurves
ROCCurveEvaluator() - Constructor for class fr.inrialpes.exmo.align.impl.eval.ROCCurveEvaluator
 
root - Variable in class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
root - Variable in class fr.inrialpes.exmo.align.gen.TestSet
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.CommonCLI
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.EvalAlign
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.ExtGroupEval
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.GenPlot
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.GroupAggreg
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.GroupAlign
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.GroupEval
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.GroupOutput
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.ParserPrinter
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.Procalign
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.TestGen
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.TransformQuery
 
run(String[]) - Method in class fr.inrialpes.exmo.align.cli.WGroupEval
 
run(String[]) - Method in class fr.inrialpes.exmo.align.service.AlignmentService
 
run() - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager.Aligner
 
RunTimeError - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
RunTimeError(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.RunTimeError
 
RunTimeError(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.RunTimeError
 
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Alignment API and Server 4.10 (2228M)

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