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Alignment API and Server 4.10 (2228M)
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C

Cache - Interface in fr.inrialpes.exmo.align.service
This interface caches the content of the alignment database.
cache - Static variable in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.skosapi.SKOSOntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.skoslite.SKOSLiteOntologyFactory
 
CACHED - Static variable in class fr.inrialpes.exmo.align.service.VolatilCache
 
calcPrefix() - Method in class fr.inrialpes.exmo.align.impl.renderer.IndentedRendererVisitor
 
callHungarianMethod(double[][], int, int) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
 
callParser(Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
Parses the document given in parameter If the current process has links (import or include) to others documents then they are parsed.
callParser(XMLParser, Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
This dispatch is ridiculous, but that's life
callParser(RDFParser, Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
 
canBeTranscribedDirectly(Relation) - Static method in class fr.inrialpes.exmo.align.impl.renderer.RelationTransformer
 
canBeTranscribedInverted(Relation) - Static method in class fr.inrialpes.exmo.align.impl.renderer.RelationTransformer
 
CannotRenderAlignment - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
CannotRenderAlignment(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.CannotRenderAlignment
 
CannotRenderAlignment(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.CannotRenderAlignment
 
CannotStoreAlignment - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
CannotStoreAlignment(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.CannotStoreAlignment
 
CannotStoreAlignment(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.CannotStoreAlignment
 
cascadeAlterators(Alterator, Properties) - Static method in class fr.inrialpes.exmo.align.gen.AlteratorFactory
 
cell - Variable in class fr.inrialpes.exmo.align.gen.LCell
 
cell - Variable in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator.EvalCell
 
cell() - Method in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator.EvalCell
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.CSVRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.JSONRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SEKTMappingRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SILKRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SKOSRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLSelectRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the relation content as text...
Cell - Interface in org.semanticweb.owl.align
Represents an correspondence between ontology entities.
cellids - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
Stores encountered cell ids
cellSet - Variable in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
 
cellSpec - Static variable in class fr.inrialpes.exmo.align.cli.GroupOutput
 
CellStruct - Class in fr.inrialpes.exmo.align.impl
 
CellStruct(Object, Object, double) - Constructor for class fr.inrialpes.exmo.align.impl.CellStruct
 
CERTIFICATE - Static variable in class fr.inrialpes.exmo.align.impl.Annotations
 
change(int) - Method in class fr.inrialpes.exmo.align.gen.URITree
 
changeColumnType(Statement, String, String, String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
changeDepth(int) - Method in class fr.inrialpes.exmo.align.gen.URITree
 
changeDomainRange(HashMap<String, String>) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
changeNamespace(String) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
Modifies the namespace of the generated ontology This is the initial implementation.
changeNamespace2(String) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
JE: starting an attempt to do the relocation through String reading and writing: The ideal case is that in the generated files, the namespace appears exactly twice: in xmlns and in xml:base.
characters(char[], int, int) - Method in class fr.inrialpes.exmo.align.parser.XMLParser
From a patch proposed by Sabine Massmann Get around some nasty double parsing bug.
checkClassesRestrictions(OntClass, OntClass) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
children - Variable in class fr.inrialpes.exmo.align.gen.URITree
 
cl1 - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the first entity of a cell
cl2 - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the second entity of a cell
CLASS - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
ClassConstruction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a ClassExpression.
ClassConstruction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
 
ClassConstruction(SyntaxElement.Constructor, Collection<ClassExpression>) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
 
ClassDomainRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
 
ClassDomainRestriction(PathExpression, boolean, ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassDomainRestriction
Constructs a typeCondition with the given restriction.
ClassDomainRestriction(PathExpression, ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassDomainRestriction
 
ClassExpression - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a ClassExpression.
ClassExpression() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassExpression
 
classHierarchy - Variable in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
ClassHierarchy - Class in fr.inrialpes.exmo.align.gen
 
ClassHierarchy() - Constructor for class fr.inrialpes.exmo.align.gen.ClassHierarchy
 
ClassId - Class in fr.inrialpes.exmo.align.impl.edoal
A simple Id to represent a Class.
ClassId() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
Creates an anonymous class pattern
ClassId(String) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
 
ClassId(URI) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
 
classIndex - Static variable in class fr.inrialpes.exmo.align.impl.BasicRelation
 
classinst1 - Variable in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
classinst2 - Variable in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
classlist1 - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
classlist2 - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.method.StringDistAlignment.StringDistMatrixMeasure
 
classMeasure(Object, Object) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
 
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.ling.JWNLAlignment.WordNetMatrixMeasure
 
classname - Variable in class fr.inrialpes.exmo.align.cli.GroupEval
 
ClassOccurenceRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a attributeOccurenceRestriction tag for a ClassExpressions.
ClassOccurenceRestriction(PathExpression, Comparator, int) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
Constructs a ClassOccurenceRestriction with the given restriction.
ClassRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Superclass for all ClassRestrictions.
ClassRestriction(PathExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
 
classScore - Variable in class fr.inrialpes.exmo.align.impl.eval.SymMeanEvaluator
 
ClassStructAlignment - Class in fr.inrialpes.exmo.align.impl.method
Establishes an alignment based on the comparison of the properties that classes have in common.
ClassStructAlignment() - Constructor for class fr.inrialpes.exmo.align.impl.method.ClassStructAlignment
Creation
ClassTypeRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a type typeCondition tag for PropertyExpressions.
ClassTypeRestriction(PathExpression, boolean, Datatype) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassTypeRestriction
Constructs a ClassTypeRestriction with the given restriction.
ClassTypeRestriction(PathExpression, Datatype) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassTypeRestriction
 
ClassValueRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a type valueCondition tag for PropertyExpressions.
ClassValueRestriction(PathExpression, Comparator, ValueExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
Constructs a ClassValueRestriction with the given restriction.
cleanUp() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Can be used for reducing the amount of memory taken by an alignment Does nothing in BasicAlignment.
cleanUp() - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Suppresses the distance matrix
cleanUpAlignments() - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
 
cleanUpAlignments() - Method in class fr.inrialpes.exmo.align.impl.OntologyTriple
 
cleanUpCache() - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
clear() - Method in class fr.inrialpes.exmo.ontowrap.OntologyCache
 
clear() - Static method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
 
clearAllHasParameter() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
All Ontologies must implement clearCache() which unload their ontologies if any cache is enabled.
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.skosapi.SKOSOntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.skoslite.SKOSLiteOntologyFactory
 
clmatrix - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Generate a (very) superficial copy of this alignment object It has the same content but a different id (no id indeed) To have a deeper copy use the copy constructor new BasicAlignment( al );
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
Clone does some deeper cloning It has the same content but a different id (no id indeed)
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicParameters
Deprecated.
 
clone() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
Generate a (shallow) copy of this alignment object For a deeper copy, use the copy constructor
clone() - Method in class fr.inrialpes.exmo.align.impl.Extensions
 
clone() - Method in interface org.semanticweb.owl.align.Alignment
Implementation of the clone method
close(boolean, boolean, boolean, Properties) - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
Computes the transitive, reflexive, symmetric closure of a network of ontology Reflexive: LEFT UNDONE Symmetric: for each pair of ontologies Transitive: for each triple of ontologies, join its alignment with the composition of the others Modifies the network (but preserves the semantics) Reflexivity is left undone (empty alignments in principle) Because it depends on (a) the type of alignment and (b) the ontology language The code below is OK, but no alignment type is available...
close() - Method in class fr.inrialpes.exmo.align.service.AlignmentService
 
close() - Method in interface fr.inrialpes.exmo.align.service.AlignmentServiceProfile
Shutdown the Service and undeclare it from any registery
close() - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
close() - Method in interface fr.inrialpes.exmo.align.service.Cache
 
close() - Method in interface fr.inrialpes.exmo.align.service.DBService
 
close() - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
close() - Method in interface fr.inrialpes.exmo.align.service.Directory
Shutdown the connection and/or registration to the directory
close() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile
 
close() - Method in class fr.inrialpes.exmo.align.service.HTTPTransport
 
close() - Method in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServProfile
 
close() - Method in class fr.inrialpes.exmo.align.service.osgi.OSGIAServProfile
 
close() - Method in class fr.inrialpes.exmo.align.service.OysterDirectory
Shutdown the connection and/or registration to the directory
close() - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
close() - Method in class fr.inrialpes.exmo.align.service.VolatilCache
 
close() - Method in class fr.inrialpes.exmo.align.service.WSAServProfile
 
close() - Method in class fr.inrialpes.exmo.align.util.NullStream
 
closeOntologyNetwork(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
closeOntologyNetwork(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
COD - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
codec - Variable in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
 
codomain - Variable in class fr.inrialpes.exmo.align.impl.edoal.RelationCoDomainRestriction
 
collectURIs(Cell) - Method in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
 
color - Variable in class fr.inrialpes.exmo.align.cli.ExtGroupEval
 
color - Variable in class fr.inrialpes.exmo.align.cli.GroupEval
 
color - Variable in class fr.inrialpes.exmo.align.cli.GroupOutput
 
color - Variable in class fr.inrialpes.exmo.align.cli.WGroupEval
 
colorFormat(double) - Method in class fr.inrialpes.exmo.align.cli.GroupOutput
 
commandLineParams - Variable in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
CommonCLI - Class in fr.inrialpes.exmo.align.cli
For instanciating this class: - extends CommonCLI - call to super() in constructor - add options in constructor - CommandLine line = parseCommandLine( args ); in main - retrieve new options - retrieve remaining args - redefine usage() with specific first line - use parameters
CommonCLI() - Constructor for class fr.inrialpes.exmo.align.cli.CommonCLI
 
COMP - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
 
Comparator - Enum in fr.inrialpes.exmo.align.impl.edoal
 
Comparator(String, int, String) - Constructor for enum fr.inrialpes.exmo.align.impl.edoal.Comparator
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.PropertyValueRestriction
 
compareTo(LCell) - Method in class fr.inrialpes.exmo.align.gen.LCell
This is not the standard required definition of compareTo But this is the one which works exactly here (we want the structure ordered, we do not want that two cells be equated (in case of 0)
compareTo(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
Used to order the cells in an alignment: this > c iff this.getStrength() < c.getStrength()
compatible(TypeCheckingVisitor.TYPE, TypeCheckingVisitor.TYPE) - Method in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
 
compileQueries() - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
compileQueries() - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
Holds all expressions.
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.PropertyConstruction
Holds all expressions: ordered for comp
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
Holds all expressions: ordered for composition
compose(AlgebraRelation<T>) - Method in interface fr.inrialpes.exmo.align.impl.AlgebraRelation
 
compose(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
The second alignment is composed with the first one meaning that for any pair (o, o', n, r) in O and (o',o", n', r') in O' the resulting alignment will contain: ( o, o", join(n,n'), compose(r, r')) iff compose(r,r') exists.
compose(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.BasicRelation
By default...
compose(AlgebraRelation<T>) - Method in class fr.inrialpes.exmo.align.impl.BitSetAlgebraRelation
 
compose(T, T) - Method in class fr.inrialpes.exmo.align.impl.BitSetAlgebraRelation
 
compose(Cell) - Method in class fr.inrialpes.exmo.align.impl.ObjectCell
 
compose(A16BaseRelation, A16BaseRelation) - Method in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
compose(A16AlgebraRelation) - Method in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
compose(A2BaseRelation, A2BaseRelation) - Method in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
compose(A2AlgebraRelation) - Method in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
compose(A5BaseRelation, A5BaseRelation) - Method in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
compose(A5AlgebraRelation) - Method in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.EquivRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.HasInstanceRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.IncompatRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.InstanceOfRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.SubsumedRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.SubsumeRelation
 
compose(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
compose(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
compose(Alignment) - Method in interface org.semanticweb.owl.align.Alignment
 
compose(Cell) - Method in interface org.semanticweb.owl.align.Cell
 
compose(Relation) - Method in interface org.semanticweb.owl.align.Relation
 
compositionTable - Static variable in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
compositionTable - Static variable in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
compositionTable - Static variable in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
compute(Properties) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
compute(Properties) - Method in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
compute(Properties) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
actually computes the similarity and store it in the adequate structures
computeAverageLinkage() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeClassDistance(Properties) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeDerived() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
 
computeDerived() - Method in class fr.inrialpes.exmo.align.impl.eval.WeightedPREvaluator
 
computeEffSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Effort-based relaxed precision and recal similarity Note: it will be better if the parameters were replaced by the actual sibling (choice) Table 3 of [Ehrig2005]
computeFullLinkage() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeHausdorffDistance() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeInstanceDistance(Properties) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
This is the empty method of this abstract class it must compute the instance distance and fill the adequate indmatrix with these distances.
computePrecisionOrientedSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Oriented relaxed precision and recal similarity Table 4 (and 5) of [Ehrig and Euzenat 2005]
computeRecallOrientedSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Oriented relaxed precision and recal similarity Table 6 (and 7) of [Ehrig and Euzenat 2005]
computeSingleLinkage() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeSymSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Symmetric relaxed precision and recal similarity This computes similarity depending on structural measures: the similarity is symALPHA^(val1+val2), symALPHA being lower than 1.
ConcatenatedIterator<O> - Class in fr.inrialpes.exmo.align.impl
This class builds a composite iterator from two iterators This helps writing more concise code.
ConcatenatedIterator(Iterator<? extends O>, Iterator<? extends O>) - Constructor for class fr.inrialpes.exmo.align.impl.ConcatenatedIterator
 
confidenceType - Variable in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
conjunction(double, double) - Static method in class fr.inrialpes.exmo.align.impl.BasicConfidence
 
conn - Variable in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String, String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connection - Variable in class fr.inrialpes.exmo.align.service.AlignmentService
 
CONNECTION_ERROR - Static variable in class fr.inrialpes.exmo.align.service.SQLCache
 
ConsensusAggregator - Class in fr.inrialpes.exmo.align.impl.aggr
 
ConsensusAggregator() - Constructor for class fr.inrialpes.exmo.align.impl.aggr.ConsensusAggregator
Creation
constrainedPath - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
The attribute on which the restriction should be applied.
CONSTRUCT - Static variable in class fr.inrialpes.exmo.queryprocessor.Type
 
Constructor() - Constructor for enum fr.inrialpes.exmo.align.parser.SyntaxElement.Constructor
 
contains(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Each cell of @align is contained in this alignment no semantics (a semantic predicate would be entails).
content - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the content found as text...
content - Variable in class fr.inrialpes.exmo.align.service.msg.Message
 
content_Corese - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
content_Corese - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
continuous - Variable in class fr.inrialpes.exmo.align.gen.TestSet
 
convertExtension(String, String) - Method in class fr.inrialpes.exmo.align.impl.Extensions
 
convertToEDOAL(BasicAlignment) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
The EDOALAlignment has LoadedOntologies as ontologies
convertToObjectAlignment(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicEvaluator
 
convertToObjectAlignments(Alignment, Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicEvaluator
 
copyOnto() - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
This is only a partial clone
corese - Variable in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
correct - Variable in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator.EvalCell
 
correct() - Method in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator.EvalCell
 
correspToAxiom(ObjectAlignment, ObjectCell) - Method in class fr.inrialpes.exmo.align.impl.eval.SemPRecEvaluator
 
COSYNSIM - Static variable in class fr.inrialpes.exmo.align.ling.JWNLAlignment
 
count - Variable in class fr.inrialpes.exmo.align.impl.aggr.BasicAggregator
 
CountCell() - Constructor for class fr.inrialpes.exmo.align.impl.aggr.BasicAggregator.CountCell
 
CountCell(double, int) - Constructor for class fr.inrialpes.exmo.align.impl.aggr.BasicAggregator.CountCell
 
COWLMappingRendererVisitor - Class in fr.inrialpes.exmo.align.impl.renderer
Renders an alignment as a new ontology merging these.
COWLMappingRendererVisitor(PrintWriter) - Constructor for class fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
 
createConstruct(String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
createCoreseQuery(String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
createCoreseQuery(String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
createEDOALExpression(LoadedOntology<Object>, URI) - Static method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
createInsertStatement(String) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
createInsertStatement(String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
createLinkConstruct(String, String, String, String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
createListOption(String, String, String, String, char) - Method in class fr.inrialpes.exmo.align.cli.CommonCLI
 
createNewAlignment(Object, Object, Class<? extends Relation>, Class<?>) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
This method is used by the algebraic operators It has to be overriden by implementations.
createNewAlignment(Object, Object, Class<? extends Relation>, Class<?>) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
createNewAlignment(Object, Object, Class<? extends Relation>, Class<?>) - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
Generate a copy of this alignment object
createNewAlignment(Object, Object, Class<? extends Relation>, Class<?>) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
 
createOption(String, String, String) - Method in class fr.inrialpes.exmo.align.cli.CommonCLI
 
createOptionalOption(String, String, String, String) - Method in class fr.inrialpes.exmo.align.cli.CommonCLI
 
createPrefixList() - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
createPropertyVarName() - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
createQuery(String, String, String, String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
createRelation(String) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
The constructor to use
createRelation(String) - Static method in class fr.inrialpes.exmo.align.impl.BasicRelation
The constructor to use
createRelation(String) - Static method in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
createRelation(A16BaseRelation...) - Static method in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
createRelation(String) - Static method in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
createRelation(A2BaseRelation...) - Static method in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
createRelation(String) - Static method in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
createRelation(A5BaseRelation...) - Static method in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
createRequiredOption(String, String, String, String) - Method in class fr.inrialpes.exmo.align.cli.CommonCLI
 
createSelect(String, String, String, String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
createSelect(List<String>, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLSelectRendererVisitor
 
createSet() - Method in class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation
 
createSet() - Method in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
createSet() - Method in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
createSet() - Method in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
createStatement() - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
createStatement(String) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
createStatement() - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
createStatement(String) - Method in class fr.inrialpes.exmo.align.service.SQLCache
 
createVarName() - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
Generates a new variable.
CSVRendererVisitor - Class in fr.inrialpes.exmo.align.impl.renderer
Renders an alignment in Comma-separated-value or Tab-separated-value - only works with URIAlignments
CSVRendererVisitor(PrintWriter) - Constructor for class fr.inrialpes.exmo.align.impl.renderer.CSVRendererVisitor
 
CTmanager - Variable in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
 
ctxt - Static variable in class fr.inrialpes.exmo.align.service.osgi.OSGIAServProfile
 
cumulated - Variable in class fr.inrialpes.exmo.align.gen.TestCase
 
current - Variable in class fr.inrialpes.exmo.align.impl.MEnumeration
 
current - Variable in class fr.inrialpes.exmo.align.impl.MIterator
 
currentElem - Variable in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIAnnotIt
 
curronto - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
 
cut(double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Default cut implementation For compatibility with API until version 1.1
cut(String, double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Cut refinement : Rule: threshold is betweew 1 and 0
CUT - Class in fr.inrialpes.exmo.align.service.jade.messageontology
Protege name: CUT
CUT() - Constructor for class fr.inrialpes.exmo.align.service.jade.messageontology.CUT
 
CUT - Static variable in class fr.inrialpes.exmo.align.service.jade.messageontology.JADEFIPAAlignmentServerOntology
 
cut(String, double) - Method in interface org.semanticweb.owl.align.Alignment
Trim an alignment under a particular threshold
cut(double) - Method in interface org.semanticweb.owl.align.Alignment
 
cut2(double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
The cut function suppresses from an alignment all the cell over a particular threshold
cutMethod - Variable in class fr.inrialpes.exmo.align.cli.GroupAggreg
 
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Alignment API and Server 4.10 (2228M)

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