public class AlignmentService extends CommonCLI
java -jar alignsvc.jar [options]where the options are:
--load=filename -l filename Load previous image --params=filename -p filename Read the parameters in file --help -h Print this message
$Id: AlignmentService.java 2222 2020-11-18 19:56:32Z euzenat $
Modifier and Type | Field and Description |
---|---|
private DBService |
connection |
java.lang.String |
DBBASE |
java.lang.String |
DBHOST |
java.lang.String |
DBMS |
java.lang.String |
DBPASS |
java.lang.String |
DBPORT |
java.lang.String |
DBUSER |
private java.util.Hashtable<java.lang.String,Directory> |
directories |
private java.lang.String |
filename |
static java.lang.String |
HOST |
static java.lang.String |
HTML |
static java.lang.String |
JADE |
static java.lang.String |
JXTA |
(package private) static org.slf4j.Logger |
logger |
protected AServProtocolManager |
manager |
java.lang.String |
OPTION |
private java.lang.String |
outfile |
private java.lang.String |
paramfile |
private java.util.Vector<AlignmentServiceProfile> |
services |
private HTTPTransport |
transport |
static java.lang.String |
WSDL |
options, outputfilename, parameters
Constructor and Description |
---|
AlignmentService() |
Modifier and Type | Method and Description |
---|---|
protected void |
close() |
protected void |
init(java.util.Properties parameters) |
protected java.lang.Object |
loadInstance(java.lang.String className) |
static void |
main(java.lang.String[] args) |
void |
readParameters(java.lang.String[] args) |
void |
run(java.lang.String[] args) |
void |
usage() |
createListOption, createOption, createOptionalOption, createRequiredOption, exit, parseCommandLine, parseSpecificCommandLine, usage, usage, usage
static final org.slf4j.Logger logger
public java.lang.String DBHOST
public java.lang.String DBPORT
public java.lang.String DBUSER
public java.lang.String DBPASS
public java.lang.String DBBASE
public java.lang.String OPTION
public java.lang.String DBMS
public static final java.lang.String HTML
public static final java.lang.String JADE
public static final java.lang.String WSDL
public static final java.lang.String JXTA
public static final java.lang.String HOST
private java.lang.String filename
private java.lang.String outfile
private java.lang.String paramfile
private java.util.Vector<AlignmentServiceProfile> services
private java.util.Hashtable<java.lang.String,Directory> directories
private HTTPTransport transport
protected AServProtocolManager manager
private DBService connection
public static void main(java.lang.String[] args)
public void run(java.lang.String[] args) throws java.lang.Exception
java.lang.Exception
protected void init(java.util.Properties parameters)
protected void close()
protected java.lang.Object loadInstance(java.lang.String className) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.InstantiationException, java.lang.IllegalAccessException, java.lang.reflect.InvocationTargetException
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.InstantiationException
java.lang.IllegalAccessException
java.lang.reflect.InvocationTargetException
public void readParameters(java.lang.String[] args)
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