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Alignment API and Server 4.10 (2228M)
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E

editALPHA - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
editBETA - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
EditDistNameAlignment - Class in fr.inrialpes.exmo.align.impl.method
This class aligns ontology with regard to the editing distance between class names.
EditDistNameAlignment() - Constructor for class fr.inrialpes.exmo.align.impl.method.EditDistNameAlignment
Creation
edoal - Variable in class fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor
 
edoal - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
edoal - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
edoal - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLSelectRendererVisitor
 
EDOALAlignment - Class in fr.inrialpes.exmo.align.impl.edoal
An alignment between complex expressions built from the elements of two ontologies It may make more sense to extend ObjectAlignment, but EDOAL does not require the ontologies to be loaded.
EDOALAlignment() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
EDOALAlignment(EDOALAlignment) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
Generate a (deeper) copy of the alignment object It has the same content but a different id (no id indeed)
EDOALAlignment(URIAlignment) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
EDOALAlignment(ObjectAlignment) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
EDOALAlignment(BasicAlignment) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
EDOALCell - Class in fr.inrialpes.exmo.align.impl.edoal
This implements an ontology correspondence when it is a correspondence from the EDOAL Mapping Language.
EDOALCell(String, Expression, Expression, Relation, double) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.EDOALCell
Creation
EDOALSQLCache - Class in fr.inrialpes.exmo.align.service
Stores an EDOAL expression in SQL and extract EDOAL expressions from the database EDOALCache is not an extension of SQLCache It is a subcomponent of SQLCache It could be made otherwise later.
EDOALSQLCache(DBService) - Constructor for class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
EDOALVisitor - Interface in fr.inrialpes.exmo.align.impl.edoal
 
effprec - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
effrec - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
effsimilarity - Variable in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
embedded - Variable in class fr.inrialpes.exmo.align.cli.ExtGroupEval
 
embedded - Variable in class fr.inrialpes.exmo.align.cli.GroupEval
 
embedded - Variable in class fr.inrialpes.exmo.align.cli.WGroupEval
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.HTMLMetadataRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.SILKRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.SKOSRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.SPARQLSelectRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.XMLMetadataRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.parser.AlignmentParser
The parsing level, if equal to 3 we are in the Alignment if equal to 5 we are in a cell and can find metadata
embedded - Variable in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
 
embedded - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
Is the Alignment RDF for embedded in a larger XML structure to be parsed.
emptyGP() - Method in class fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor
 
EmptyModification - Class in fr.inrialpes.exmo.align.gen.alt
 
EmptyModification(OntModel) - Constructor for class fr.inrialpes.exmo.align.gen.alt.EmptyModification
 
emptySet - Static variable in class fr.inrialpes.exmo.align.impl.rel.A16AlgebraRelation
 
emptySet - Static variable in class fr.inrialpes.exmo.align.impl.rel.A2AlgebraRelation
 
emptySet - Static variable in class fr.inrialpes.exmo.align.impl.rel.A5AlgebraRelation
 
ENC - Variable in class fr.inrialpes.exmo.align.impl.renderer.IndentedRendererVisitor
 
encodeURI(URI) - Method in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
 
endElement(String, String, String) - Method in class fr.inrialpes.exmo.align.parser.XMLParser
Called by the XML parser at the end of an element.
endNamedGraph(String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLSelectRendererVisitor
 
entails(BitSetDisjunctiveRelation<T>) - Method in class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation
 
EntityFilter<T> - Class in fr.inrialpes.exmo.ontowrap.util
 
EntityFilter(Set<T>, LoadedOntology<?>) - Constructor for class fr.inrialpes.exmo.ontowrap.util.EntityFilter
 
EntityList - Class in fr.inrialpes.exmo.align.service.msg
A set of entities matching another entity
EntityList(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.EntityList
 
EntityList(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.EntityList
 
EQUAL_KEY - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
equalObjectFilterStatement(String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
equals(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
 
equals(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicRelation
Are the two relations equal
equals(Relation) - Method in class fr.inrialpes.exmo.align.impl.BasicRelation
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation
Are the two relations equal
equals(Relation) - Method in class fr.inrialpes.exmo.align.impl.BitSetDisjunctiveRelation
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.Aggregate
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.Apply
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassId
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.Datatype
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyId
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationId
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.TransfService
 
equals(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.Value
 
equals(Object) - Method in class fr.inrialpes.exmo.ontowrap.Annotation
 
equals(Cell) - Method in interface org.semanticweb.owl.align.Cell
 
equals(Relation) - Method in interface org.semanticweb.owl.align.Relation
 
equalValueFilterStatement(String, String) - Method in class fr.inrialpes.exmo.align.impl.renderer.SPARQLLinkkerRendererVisitor
 
EQUIV - Static variable in class fr.inrialpes.exmo.align.impl.renderer.RelationTransformer
 
EquivRelation - Class in fr.inrialpes.exmo.align.impl.rel
Represents an OWL equivalence relation.
EquivRelation() - Constructor for class fr.inrialpes.exmo.align.impl.rel.EquivRelation
Creation
erase(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
erase(EDOALCell) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
eraseAlignment(String, boolean) - Method in interface fr.inrialpes.exmo.align.service.Cache
Non publicised class
eraseAlignment(String, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
Non publicised class
eraseOntologyNetwork(String, boolean) - Method in interface fr.inrialpes.exmo.align.service.Cache
 
eraseOntologyNetwork(String, boolean) - Method in class fr.inrialpes.exmo.align.service.VolatilCache
Non publicised class
error - Variable in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
 
ErrorMsg - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
ErrorMsg(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.ErrorMsg
 
ErrorMsg(Properties, int, String, String) - Constructor for class fr.inrialpes.exmo.align.service.msg.ErrorMsg
 
eval(String, String) - Method in class fr.inrialpes.exmo.align.cli.ExtGroupEval
 
eval(String, String) - Method in class fr.inrialpes.exmo.align.cli.GroupEval
 
eval(String, String) - Method in class fr.inrialpes.exmo.align.cli.GroupOutput
 
eval(String, String) - Method in class fr.inrialpes.exmo.align.cli.WGroupEval
 
eval() - Method in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
Returns the points to display in a graph
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
Compute precision and recall graphs.
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.DiffEvaluator
 
eval(Properties, Object) - Method in class fr.inrialpes.exmo.align.impl.eval.DiffEvaluator
 
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
This is a partial implementation of [Ehrig and Euzenat 2005] because the relations are not taken into account (they are supposed to be always =)
eval(Properties, Object) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
 
eval() - Method in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
 
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
 
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
Computes the evaluation measure (the results are stored in the object) The formulas are standard: given a reference alignment A given an obtained alignment B which are sets of cells (linking one entity of ontology O to another of ontolohy O').
eval(Properties, Object) - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
 
eval() - Method in class fr.inrialpes.exmo.align.impl.eval.PRGraphEvaluator
Compute precision and recall graphs.
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.PRGraphEvaluator
Compute precision and recall graphs.
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.ROCCurveEvaluator
Compute ROCCurve points From an ordered vector of cells with their correctness status
eval() - Method in class fr.inrialpes.exmo.align.impl.eval.ROCCurveEvaluator
For the moment *
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.SemPRecEvaluator
Computes the evaluation measure (the results are stored in the object) The formulas are standard (see PREvaluation) except that they use the entailment of a correspondence by an alignment instead of set-membership This takes semantics as a parameter which should be a litteral of fr.paris8.iut.info.draon.conf.Semantics
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.SymMeanEvaluator
 
eval(Properties, Object) - Method in class fr.inrialpes.exmo.align.impl.eval.SymMeanEvaluator
 
eval() - Method in class fr.inrialpes.exmo.align.impl.eval.ThresholdGraphEvaluator
Compute threshold graph
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.ThresholdGraphEvaluator
Returns a list of Measure at threshold points (Pairs) From an ordered vector of cells with their correctness status The basic strategy would be: Take the alignment/(Compute P/R/Apply threshold)+ But it is better to: take the cells in reverse order Compute the measures on the fly
eval(Properties) - Method in class fr.inrialpes.exmo.align.impl.eval.WeightedPREvaluator
Computes the evaluation measure (the results are stored in the object) The formulas are standard (see PREvaluation) except that they use the difference between confidences instead of booleans
eval(Properties, Object) - Method in class fr.inrialpes.exmo.align.impl.eval.WeightedPREvaluator
 
eval(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
eval(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
eval(Properties) - Method in interface org.semanticweb.owl.align.Evaluator
Run the evaluation between the two ontologies.
eval(Properties, Object) - Method in interface org.semanticweb.owl.align.Evaluator
Run the evaluation between the two ontologies.
EvalAlign - Class in fr.inrialpes.exmo.align.cli
A really simple utility that loads and alignment and prints it.
EvalAlign() - Constructor for class fr.inrialpes.exmo.align.cli.EvalAlign
 
evalAlignment(Alignment, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
 
EvalCell(Cell, boolean) - Constructor for class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator.EvalCell
 
evalConstructor - Variable in class fr.inrialpes.exmo.align.cli.GenPlot
 
evalConstructor - Variable in class fr.inrialpes.exmo.align.cli.GroupEval
 
evalOldStyle() - Method in class fr.inrialpes.exmo.align.impl.eval.PRGraphEvaluator
Returns a list of Precision at recall points (Pairs) From an ordered vector of cells with their correctness status
evalOpenEnded() - Method in class fr.inrialpes.exmo.align.impl.eval.PRGraphEvaluator
Returns a list of Precision at recall points (Pairs) From an ordered vector of cells with their correctness status
EvalResult - Class in fr.inrialpes.exmo.align.service.msg
Contains the messages that should be sent according to the protocol
EvalResult(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.EvalResult
 
EvalResult(Properties, int, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.EvalResult
 
EvaluationId - Class in fr.inrialpes.exmo.align.service.msg
The id of the result of an evaluation
EvaluationId(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.msg.EvaluationId
 
Evaluator - Interface in org.semanticweb.owl.align
Assess the closeness between two ontology alignments.
evaluators - Variable in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
executeUpdateWithId(PreparedStatement, String) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
EXIST - Static variable in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
existingAlignments(Properties) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
existingAlignments(Properties) - Method in interface fr.inrialpes.exmo.align.service.osgi.Service
 
exit(int) - Method in class fr.inrialpes.exmo.align.cli.CommonCLI
 
exploreJar(Set<String>, Set<String>, Class<?>, JarFile) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
expr1 - Variable in class fr.inrialpes.exmo.align.impl.edoal.Transformation
 
expr2 - Variable in class fr.inrialpes.exmo.align.impl.edoal.Transformation
 
Expression - Class in fr.inrialpes.exmo.align.impl.edoal
This class serves as the base for the four different expression types.
Expression() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.Expression
 
expression1 - Variable in class fr.inrialpes.exmo.align.impl.edoal.LinkkeyBinding
 
expression2 - Variable in class fr.inrialpes.exmo.align.impl.edoal.LinkkeyBinding
 
Extensible - Interface in fr.inrialpes.exmo.align.impl
 
extensions - Variable in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
extensions - Variable in class fr.inrialpes.exmo.align.impl.BasicCell
 
extensions - Variable in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
 
extensions - Variable in class fr.inrialpes.exmo.align.impl.edoal.Linkkey
 
Extensions - Class in fr.inrialpes.exmo.align.impl
This contains the metadata extensions They are indexed by namespace + local name.
Extensions() - Constructor for class fr.inrialpes.exmo.align.impl.Extensions
 
Extensions(Hashtable<String, String[]>) - Constructor for class fr.inrialpes.exmo.align.impl.Extensions
 
extensions - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
Cell extensions (default null)
ExtGroupEval - Class in fr.inrialpes.exmo.align.cli
A basic class for synthesizing the results of a set of alignments provided by different algorithms.
ExtGroupEval() - Constructor for class fr.inrialpes.exmo.align.cli.ExtGroupEval
 
ExtPREvaluator - Class in fr.inrialpes.exmo.align.impl.eval
Implements extended precision and recall between alignments.
ExtPREvaluator(Alignment, Alignment) - Constructor for class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Creation
extract() - Method in class fr.inrialpes.exmo.align.impl.aggr.AverageAggregator
Set the confidence of correspondence in the alignments as the average of confidence that they obtained in the aggregated alignments (confidence is 0.
extract() - Method in class fr.inrialpes.exmo.align.impl.aggr.BasicAggregator
Extract the alignment from consensus This has to be implemented in concrete classes
extract() - Method in class fr.inrialpes.exmo.align.impl.aggr.ConsensusAggregator
Set the confidence of correspondence in the alignments as the proportion of aggregated alignments featuring this correspondence (initial alignment could have trimmed before for accounting for their confidence or AverageAggregator could be used).
extract(String, Properties) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Extract the alignment form the Similarity
extractAlignment(String, String) - Method in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
extractApply(long, int) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractBindings(long, Linkkey) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractClassConstruction(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractClassExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractClassId(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractClassRestriction(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractClassValueRestriction(PathExpression, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractDatatype(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractedAlignment - Variable in class fr.inrialpes.exmo.align.gen.alt.BasicAlterator
 
extractExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractInstanceExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractInstanceId(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractLinkkeys(String, EDOALCell) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPathExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPropertyConstruction(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPropertyDomainRestriction(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPropertyExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPropertyId(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPropertyTypeRestriction(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractPropertyValueRestriction(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractqq(double, Properties) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Extract the alignment of a ?? type exact algorithm using the Hungarian method.
extractqqgreedy(double, Properties) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Greedy algorithm: 1) dump the part of the matrix distance above threshold in a sorted set 2) traverse the sorted set and each time a correspondence involving two entities that have no correspondence is encountered, add it to the alignment.
extractqs(double, Properties) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
 
extractRelationCoDomainRestriction(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractRelationConstruction(int, long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractRelationDomainRestriction(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractRelationExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractRelationId(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractsq(double, Properties) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Extract the alignment of a ?* type Non symmetric: for each entity of onto1, take the highest if superior to threshold Complexity: O(n^2)
extractss(double, Properties) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Extract the alignment of a ** type Symmetric: return all elements above threshold Complexity: O(n^2)
extractTransformations(String, EDOALCell) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractValue(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
extractValueExpression(long) - Method in class fr.inrialpes.exmo.align.service.EDOALSQLCache
 
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Alignment API and Server 4.10 (2228M)

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