Alignment API and Server 4.1.${version.update}
A B C D E F G H I J K L M N O P Q R S T U V W X Y _

C

cache - Variable in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.skosapi.SKOSOntologyFactory
 
cache - Static variable in class fr.inrialpes.exmo.ontowrap.skoslite.SKOSLiteOntologyFactory
 
CACHED - Static variable in class fr.inrialpes.exmo.align.service.CacheImpl
 
CacheImpl - Class in fr.inrialpes.exmo.align.service
This class caches the content of the alignment database.
CacheImpl(DBService) - Constructor for class fr.inrialpes.exmo.align.service.CacheImpl
 
calcPrefix() - Method in class fr.inrialpes.exmo.align.impl.renderer.IndentedRendererVisitor
 
callParser(Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
Parses the document given in parameter If the current process has links (import or include) to others documents then they are parsed.
callParser(XMLParser, Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
This dispatch is ridiculous, but that's life
callParser(RDFParser, Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
 
CannotRenderAlignment - Class in fr.inrialpes.exmo.align.service
Contains the messages that should be sent according to the protocol
CannotRenderAlignment(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.CannotRenderAlignment
 
cell - Variable in class fr.inrialpes.exmo.align.impl.eval.EvalCell
 
cell() - Method in class fr.inrialpes.exmo.align.impl.eval.EvalCell
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SEKTMappingRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SKOSRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
 
cell - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the relation content as text...
Cell - Interface in org.semanticweb.owl.align
Represents an correspondence between ontology entities.
cellSet - Variable in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
 
cellSpec - Static variable in class fr.inrialpes.exmo.align.util.GroupOutput
 
CERTIFICATE - Static variable in class fr.inrialpes.exmo.align.impl.Annotations
 
changeColumnType(Statement, String, String, String) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
 
characters(char[], int, int) - Method in class fr.inrialpes.exmo.align.parser.XMLParser
Put the content in a variable
cl1 - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the first entity of a cell
cl2 - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the second entity of a cell
ClassConstruction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a ClassExpression.
ClassConstruction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
 
ClassConstruction(SyntaxElement.Constructor, Collection<ClassExpression>) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
 
ClassDomainRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
 
ClassDomainRestriction(PathExpression, boolean, ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassDomainRestriction
Constructs a typeCondition with the given restriction.
ClassDomainRestriction(PathExpression, ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassDomainRestriction
 
ClassExpression - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a ClassExpression.
ClassExpression() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassExpression
 
ClassId - Class in fr.inrialpes.exmo.align.impl.edoal
A simple Id to represent a Class.
ClassId() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
Creates an anonymous class pattern
ClassId(String) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
 
ClassId(URI) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
 
classinst1 - Variable in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
classinst2 - Variable in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
classlist1 - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
classlist2 - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.method.StringDistAlignment.StringDistMatrixMeasure
 
classMeasure(Object, Object) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
 
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.ling.JWNLAlignment.WordNetMatrixMeasure
 
ClassOccurenceRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a attributeOccurenceRestriction tag for a ClassExpressions.
ClassOccurenceRestriction(PathExpression, Comparator, int) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
Constructs a ClassOccurenceRestriction with the given restriction.
ClassRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Superclass for all ClassRestrictions.
ClassRestriction(PathExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
 
classScore - Variable in class fr.inrialpes.exmo.align.impl.eval.SymMeanEvaluator
 
ClassStructAlignment - Class in fr.inrialpes.exmo.align.impl.method
Establishes an alignment based on the comparison of the properties that classes have in common.
ClassStructAlignment() - Constructor for class fr.inrialpes.exmo.align.impl.method.ClassStructAlignment
Creation
ClassTypeRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a type typeCondition tag for PropertyExpressions.
ClassTypeRestriction(PathExpression, boolean, Datatype) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassTypeRestriction
Constructs a ClassTypeRestriction with the given restriction.
ClassTypeRestriction(PathExpression, Datatype) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassTypeRestriction
 
ClassValueRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
Represents a type valueCondition tag for PropertyExpressions.
ClassValueRestriction(PathExpression, Comparator, ValueExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
Constructs a ClassValueRestriction with the given restriction.
cleanUp() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Can be used for reducing the amount of memory taken by an alignment Does nothing in BasicAlignment.
cleanUp() - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
Suppresses the distance matrix
cleanUpCache() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
 
clear() - Method in class fr.inrialpes.exmo.ontowrap.OntologyCache
 
clear() - Static method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
 
clearAllHasParameter() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
All Ontologies must implement clearCache() which unload their ontologies if any cache is enabled.
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.skosapi.SKOSOntologyFactory
 
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.skoslite.SKOSLiteOntologyFactory
 
clmatrix - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Generate a copy of this alignment object It has the same content but a different id (no id indeed)
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicParameters
 
clone() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
Generate a copy of this alignment object
clone() - Method in class fr.inrialpes.exmo.align.impl.edoal.TransfService
 
clone() - Method in class fr.inrialpes.exmo.align.impl.Extensions
 
clone() - Method in class fr.inrialpes.exmo.align.service.WSAlignment
Generate a copy of this alignment object
clone() - Method in interface org.semanticweb.owl.align.Alignment
Implementation of the clone method
close() - Method in class fr.inrialpes.exmo.align.service.AlignmentService
 
close() - Method in interface fr.inrialpes.exmo.align.service.AlignmentServiceProfile
Shutdown the Service and undeclare it from any registery
close() - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
close() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
 
close() - Method in interface fr.inrialpes.exmo.align.service.DBService
 
close() - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
close() - Method in interface fr.inrialpes.exmo.align.service.Directory
Shutdown the connection and/or registration to the directory
close() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile
Je//: should certainly do more than that!
close() - Method in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServProfile
 
close() - Method in class fr.inrialpes.exmo.align.service.OysterDirectory
Shutdown the connection and/or registration to the directory
close() - Method in class fr.inrialpes.exmo.align.service.WSAServProfile
 
close() - Method in class fr.inrialpes.exmo.align.util.NullStream
 
codec - Variable in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
 
codomain - Variable in class fr.inrialpes.exmo.align.impl.edoal.RelationCoDomainRestriction
 
collectURIs(Cell) - Method in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
 
color - Variable in class fr.inrialpes.exmo.align.util.ExtGroupEval
 
color - Variable in class fr.inrialpes.exmo.align.util.GroupEval
 
color - Variable in class fr.inrialpes.exmo.align.util.GroupOutput
 
colorFormat(double) - Method in class fr.inrialpes.exmo.align.util.GroupOutput
 
commandLineParams - Variable in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
 
Comparator - Class in fr.inrialpes.exmo.align.impl.edoal
 
Comparator() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.Comparator
 
Comparator(URI) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.Comparator
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.PropertyValueRestriction
 
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ValueConstraint
 
compareTo(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
Used to order the cells in an alignment: -- this > c iff this.getStrength() < c.getStrength() --
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
Holds all expressions.
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.PropertyConstruction
Holds all expressions.
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
Holds all expressions.
compose(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
The second alignment is composed with the first one meaning that for any pair (o, o', n, r) in O and (o',o", n', r') in O' the resulting alignment will contain: ( o, o", join(n,n'), compose(r, r')) iff compose(r,r') exists.
compose(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.BasicRelation
By default...
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALRelation
 
compose(Cell) - Method in class fr.inrialpes.exmo.align.impl.ObjectCell
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.EquivRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.IncompatRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.SubsumedRelation
 
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.SubsumeRelation
 
compose(Message) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
 
compose(Alignment) - Method in interface org.semanticweb.owl.align.Alignment
 
compose(Cell) - Method in interface org.semanticweb.owl.align.Cell
 
compose(Relation) - Method in interface org.semanticweb.owl.align.Relation
 
compute(Properties) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
compute(Properties) - Method in class fr.inrialpes.exmo.align.impl.MatrixMeasure
 
compute(Properties) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
actually computes the similarity and store it in the adequate structures
computeAverageLinkage() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeClassDistance(Properties) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeDerived() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
 
computeEffSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Effort-based relaxed precision and recal similarity Note: it will be better if the parameters were replaced by the actual sibling (choice) Table 3 of [Ehrig2005]
computeFullLinkage() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeHausdorffDistance() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeInstanceDistance(Properties) - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
This is the empty method of this abstract class it must compute the instance distance and fill the adequate indmatrix with these distances.
computePrecisionOrientedSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Oriented relaxed precision and recal similarity Table 4 (& 5) of [Ehrig2005]
computeRecallOrientedSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Oriented relaxed precision and recal similarity Table 6 (& 7) of [Ehrig2005]
computeSingleLinkage() - Method in class fr.inrialpes.exmo.align.impl.InstanceBasedMatrixMeasure
 
computeSymSimilarity(Cell, Alignment) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
Symmetric relaxed precision and recal similarity This computes similarity depending on structural measures: the similarity is symALPHA^(val1+val2), symALPHA being lower than 1.
ConcatenatedIterator<O> - Class in fr.inrialpes.exmo.align.impl
This class builds a composite iterator from two iterators This helps writing more concise code.
ConcatenatedIterator(Iterator<O>, Iterator<O>) - Constructor for class fr.inrialpes.exmo.align.impl.ConcatenatedIterator
 
conn - Variable in class fr.inrialpes.exmo.align.service.CacheImpl
 
conn - Variable in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String, String, String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
 
connect(String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connect(String, String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
 
connection - Variable in class fr.inrialpes.exmo.align.service.AlignmentService
 
CONNECTION_ERROR - Variable in class fr.inrialpes.exmo.align.service.CacheImpl
 
ConsensusAggregator - Class in fr.inrialpes.exmo.align.impl.aggr
 
ConsensusAggregator() - Constructor for class fr.inrialpes.exmo.align.impl.aggr.ConsensusAggregator
Creation
ConsensusAggregator.CountCell - Class in fr.inrialpes.exmo.align.impl.aggr
 
ConsensusAggregator.CountCell() - Constructor for class fr.inrialpes.exmo.align.impl.aggr.ConsensusAggregator.CountCell
 
ConsensusAggregator.CountCell(double, int) - Constructor for class fr.inrialpes.exmo.align.impl.aggr.ConsensusAggregator.CountCell
 
constrainedPath - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
The attribute on which the restriction should be applied.
CONSTRUCT - Static variable in class fr.inrialpes.exmo.queryprocessor.Type
 
content - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
the content found as text...
content - Variable in class fr.inrialpes.exmo.align.service.Message
 
correct - Variable in class fr.inrialpes.exmo.align.impl.eval.EvalCell
 
correct() - Method in class fr.inrialpes.exmo.align.impl.eval.EvalCell
 
COSYNSIM - Static variable in class fr.inrialpes.exmo.align.ling.JWNLAlignment
 
count - Variable in class fr.inrialpes.exmo.align.impl.aggr.ConsensusAggregator
 
COWLMappingRendererVisitor - Class in fr.inrialpes.exmo.align.impl.renderer
Renders an alignment as a new ontology merging these.
COWLMappingRendererVisitor(PrintWriter) - Constructor for class fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
 
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
 
createDistanceMatrix() - Method in interface fr.inrialpes.exmo.align.impl.PreAlignment
 
createNewAlignment(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Algebraic part This is to be improved by (TODO): - improving cell equivalence (maybe not dependent on the confidence...
createNewAlignment(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
Generate a copy of this alignment object
createNewAlignment(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
 
createRelation(String) - Static method in class fr.inrialpes.exmo.align.impl.BasicRelation
 
createStatement() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
 
CTmanager - Variable in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
 
current - Variable in class fr.inrialpes.exmo.align.impl.MEnumeration
 
current - Variable in class fr.inrialpes.exmo.align.impl.MIterator
 
currentElem - Variable in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIAnnotIt
 
curronto - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
 
cut(double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Default cut implementation For compatibility with API until version 1.1
cut(String, double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
Cut refinement : - getting those cells with strength above n (hard) - getting the n best cells (best) - getting those cells with strength at worse n under the best (span) - getting the n% best cells (perc) - getting those cells with strength at worse n% of the best (prop) - getting all cells until a gap of n (hardgap) - getting all cells until a gap of n% of the last (propgap) Rule: threshold is betweew 1 and 0
CUT - Class in fr.inrialpes.exmo.align.service.jade.messageontology
Protege name: CUT
CUT() - Constructor for class fr.inrialpes.exmo.align.service.jade.messageontology.CUT
 
CUT - Static variable in class fr.inrialpes.exmo.align.service.jade.messageontology.JADEFIPAAlignmentServerOntology
 
cut(String, double) - Method in interface org.semanticweb.owl.align.Alignment
 
cut(double) - Method in interface org.semanticweb.owl.align.Alignment
 
cut2(double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
The cut function suppresses from an alignment all the cell over a particular threshold

Alignment API and Server 4.1.${version.update}
A B C D E F G H I J K L M N O P Q R S T U V W X Y _
(C) INRIA & friends, 2003-${curryear}