Alignment API and Server 3.5

Uses of Interface
org.semanticweb.owl.align.Parameters

Packages that use Parameters
fr.inrialpes.exmo.align.impl   
fr.inrialpes.exmo.align.impl.eval   
fr.inrialpes.exmo.align.impl.method   
fr.inrialpes.exmo.align.impl.renderer   
fr.inrialpes.exmo.align.ling   
fr.inrialpes.exmo.align.parser   
fr.inrialpes.exmo.align.service   
fr.inrialpes.exmo.align.service.jade   
fr.inrialpes.exmo.align.util   
org.semanticweb.owl.align   
 

Uses of Parameters in fr.inrialpes.exmo.align.impl
 

Classes in fr.inrialpes.exmo.align.impl that implement Parameters
 class BasicParameters
          Standard parameter list structure to be used everywhere.
 

Fields in fr.inrialpes.exmo.align.impl declared as Parameters
protected  Parameters BasicAlignment.extensions
           
protected  Parameters BasicCell.extensions
           
protected  Parameters BasicAlignment.namespaces
           
 

Methods in fr.inrialpes.exmo.align.impl that return Parameters
 Parameters BasicAlignment.getExtensions()
           
 Parameters BasicCell.getExtensions()
           
static Parameters BasicAlignment.getParameters()
           
static Parameters DistanceAlignment.getParameters()
           
 Parameters BasicAlignment.getXNamespaces()
           
static Parameters BasicParameters.read(Parameters p, String filename)
           
static Parameters BasicParameters.read(String filename)
           
 

Methods in fr.inrialpes.exmo.align.impl with parameters of type Parameters
 Cell BasicAlignment.addAlignCell(String id, Object ob1, Object ob2, Relation relation, double measure, Parameters extensions)
          Cell methods
 Cell OWLAPIAlignment.addAlignCell(String id, Object ob1, Object ob2, Relation relation, double measure, Parameters extensions)
          Deprecated. Cell methods
 void DistanceAlignment.align(Alignment alignment, Parameters params)
          Process matching - create distance data structures, - compute distance or similarity - extract alignment
 void MatrixMeasure.compute(Parameters params)
           
 void Similarity.compute(Parameters p)
           
 Alignment DistanceAlignment.extract(String type, Parameters params)
          Extract the alignment form the Similarity There are theoretically 16 types of extractors composing the characteristics [q]estion mark = ?, one or zero relation [s]tar = *, one, zero or many relations [1] = 1, exactly one relation [p]lus = +, one or many relations for each place of the relation.
 Alignment DistanceAlignment.extractqq(double threshold, Parameters params)
          Extract the alignment of a ?? type exact algorithm using the Hungarian method
 Alignment DistanceAlignment.extractqqNaive(double threshold, Parameters params)
          Naive algorithm: 1) dump the part of the matrix distance above threshold in a sorted set 2) traverse the sorted set and each time a correspondence involving two entities that have no correspondence is encountered, add it to the alignment.
 Alignment DistanceAlignment.extractqs(double threshold, Parameters params)
          Extract the alignment of a ?* type Complexity: O(n^2)
 void DistanceAlignment.printDistanceMatrix(Parameters params)
          Prints the distance matrix
static Parameters BasicParameters.read(Parameters p, String filename)
           
 void BasicCell.setExtensions(Parameters p)
           
 

Uses of Parameters in fr.inrialpes.exmo.align.impl.eval
 

Methods in fr.inrialpes.exmo.align.impl.eval with parameters of type Parameters
 double ExtPREvaluator.eval(Parameters params)
          This is a partial implementation of [Ehrig & Euzenat 2005] because the relations are not taken into account (they are supposed to be always =)
 double PRGraphEvaluator.eval(Parameters params)
          Compute precision and recall graphs.
 double PRecEvaluator.eval(Parameters params)
          The formulas are standard: given a reference alignment A given an obtained alignment B which are sets of cells (linking one entity of ontology O to another of ontolohy O').
 double SymMeanEvaluator.eval(Parameters params)
           
 double ExtPREvaluator.eval(Parameters params, Object cache)
           
 double PRGraphEvaluator.eval(Parameters params, Object cache)
           
 double PRecEvaluator.eval(Parameters params, Object cache)
           
 double SymMeanEvaluator.eval(Parameters params, Object cache)
           
 

Uses of Parameters in fr.inrialpes.exmo.align.impl.method
 

Methods in fr.inrialpes.exmo.align.impl.method that return Parameters
static Parameters StringDistAlignment.getParameters()
           
 

Methods in fr.inrialpes.exmo.align.impl.method with parameters of type Parameters
 void ClassStructAlignment.align(Alignment alignment, Parameters params)
          Processing
 void NameAndPropertyAlignment.align(Alignment alignment, Parameters params)
          Processing
 void StringDistAlignment.align(Alignment alignment, Parameters params)
           
 void StrucSubsDistAlignment.align(Alignment alignment, Parameters params)
          Processing
 

Uses of Parameters in fr.inrialpes.exmo.align.impl.renderer
 

Methods in fr.inrialpes.exmo.align.impl.renderer with parameters of type Parameters
 void COWLMappingRendererVisitor.init(Parameters p)
           
 void HTMLRendererVisitor.init(Parameters p)
           
 void OWLAxiomsRendererVisitor.init(Parameters p)
           
 void RDFRendererVisitor.init(Parameters p)
           
 void SEKTMappingRendererVisitor.init(Parameters p)
           
 void SKOSRendererVisitor.init(Parameters p)
           
 void SWRLRendererVisitor.init(Parameters p)
           
 void XMLMetadataRendererVisitor.init(Parameters p)
           
 void XSLTRendererVisitor.init(Parameters p)
           
 

Uses of Parameters in fr.inrialpes.exmo.align.ling
 

Methods in fr.inrialpes.exmo.align.ling with parameters of type Parameters
 void JWNLAlignment.align(Alignment alignment, Parameters params)
          Processing
 

Uses of Parameters in fr.inrialpes.exmo.align.parser
 

Fields in fr.inrialpes.exmo.align.parser declared as Parameters
protected  Parameters AlignmentParser.extensions
          Cell extensions (default null)
 

Uses of Parameters in fr.inrialpes.exmo.align.service
 

Fields in fr.inrialpes.exmo.align.service declared as Parameters
(package private)  Parameters AServProtocolManager.commandLineParams
           
(package private)  Parameters Message.parameters
           
 

Methods in fr.inrialpes.exmo.align.service that return Parameters
 Parameters Message.getParameters()
           
private  Parameters WSAServProfile.getParameters(Document doc)
           
 Parameters AlignmentService.readParameters(String[] args)
           
 

Methods in fr.inrialpes.exmo.align.service with parameters of type Parameters
 HTMLAServProfile.Response HTMLAServProfile.adminAnswer(String uri, String perf, Properties header, Parameters params)
          HTTP administration interface Allows some limited administration of the server through HTTP
 void WSAlignment.align(Alignment alignment, Parameters params)
          Process matching This does not work with regular AServ web service because it returns an URL
 HTMLAServProfile.Response HTMLAServProfile.htmlAnswer(String uri, String perf, Properties header, Parameters params)
          User friendly HTTP interface uses the protocol but offers user-targeted interaction
 void AServProtocolManager.init(DBService connection, Parameters p)
           
 void CacheImpl.init(Parameters p)
          loads the alignment descriptions from the database and put them in the alignmentTable hashtable
 void AlignmentServiceProfile.init(Parameters p, AServProtocolManager m)
          Creates the Service object and declares it after any required registery
 void HTMLAServProfile.init(Parameters params, AServProtocolManager manager)
          Starts a HTTP server to given port.
 void WSAServProfile.init(Parameters params, AServProtocolManager manager)
           
 void Directory.open(Parameters p)
          Create a connection and/or registration to a directory Parameters can contain, e.g.: - the directory address - the declaration of the current service
 void OysterDirectory.open(Parameters p)
          Create a connection and/or registration to a directory Parameters can contain, e.g.: - the directory address - the declaration of the current service
 String WSAServProfile.protocolAnswer(String uri, String perf, Properties header, Parameters param)
          HTTP protocol implementation each call of the protocol is a direct URL and the answer is through the resulting page (RDF? SOAP? HTTP?) Not implemented yet but reserved if appears useful
 HTMLAServProfile.Response HTMLAServProfile.wsdlAnswer(String uri, String perf, Properties header, Parameters params)
           
 

Constructors in fr.inrialpes.exmo.align.service with parameters of type Parameters
AlignmentId(int surr, Message rep, String from, String to, String cont, Parameters param)
           
AlignmentIds(int surr, Message rep, String from, String to, String cont, Parameters param)
           
AlignmentMetadata(int surr, Message rep, String from, String to, String cont, Parameters param)
           
CannotRenderAlignment(int surr, Message rep, String from, String to, String cont, Parameters param)
           
ErrorMsg(int surr, Message rep, String from, String to, String cont, Parameters param)
           
EvalResult(int surr, Message rep, String from, String to, String cont, Parameters param)
           
EvaluationId(int surr, Message rep, String from, String to, String cont, Parameters param)
           
Message(int surr, Message rep, String from, String to, String cont, Parameters param)
           
NonConformParameters(int surr, Message rep, String from, String to, String cont, Parameters param)
           
OntologyURI(int surr, Message rep, String from, String to, String cont, Parameters param)
           
RenderedAlignment(int surr, Message rep, String from, String to, String cont, Parameters param)
           
RunTimeError(int surr, Message rep, String from, String to, String cont, Parameters param)
           
Success(int surr, Message rep, String from, String to, String cont, Parameters param)
           
TranslatedMessage(int surr, Message rep, String from, String to, String cont, Parameters param)
           
UnknownAlignment(int surr, Message rep, String from, String to, String cont, Parameters param)
           
UnknownMethod(int surr, Message rep, String from, String to, String cont, Parameters param)
           
UnreachableAlignment(int surr, Message rep, String from, String to, String cont, Parameters param)
           
UnreachableOntology(int surr, Message rep, String from, String to, String cont, Parameters param)
           
 

Uses of Parameters in fr.inrialpes.exmo.align.service.jade
 

Fields in fr.inrialpes.exmo.align.service.jade declared as Parameters
private  Parameters JadeFIPAAServiceAgent.initialParameters
           
 

Methods in fr.inrialpes.exmo.align.service.jade that return Parameters
private  Parameters JadeFIPAAServiceAgent.decodeMessage(jade.content.ContentElement ce, Parameters param)
           
 

Methods in fr.inrialpes.exmo.align.service.jade with parameters of type Parameters
private  Parameters JadeFIPAAServiceAgent.decodeMessage(jade.content.ContentElement ce, Parameters param)
           
 void JadeFIPAAServProfile.init(Parameters params, AServProtocolManager manager)
           
 

Uses of Parameters in fr.inrialpes.exmo.align.util
 

Fields in fr.inrialpes.exmo.align.util declared as Parameters
(package private)  Parameters ExtGroupEval.params
           
(package private)  Parameters GenPlot.params
           
(package private)  Parameters GroupAlign.params
           
(package private)  Parameters GroupEval.params
           
(package private)  Parameters GroupOutput.params
           
 

Uses of Parameters in org.semanticweb.owl.align
 

Methods in org.semanticweb.owl.align that return Parameters
 Parameters Alignment.getExtensions()
          Extensions are a way to read and add other information (metadata) to the alignment structure itself.
 Parameters Cell.getExtensions()
          Extensions are a way to read and add other information (metadata) to the Cell structure itself.
 

Methods in org.semanticweb.owl.align with parameters of type Parameters
 void AlignmentProcess.align(Alignment alignment, Parameters param)
          The align method computes the alignment from the ontologies.
 double Evaluator.eval(Parameters param)
          Run the evaluation between the two ontologies.
 double Evaluator.eval(Parameters param, Object cache)
          Run the evaluation between the two ontologies.
 void AlignmentVisitor.init(Parameters p)
           
 void Cell.setExtensions(Parameters param)
           
 


Alignment API and Server 3.5

(C) INRIA & friends, 2003-2008